PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002306-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HD-ZIP
Protein Properties Length: 199aa    MW: 22754.8 Da    PI: 7.5063
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002306-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.3e-1963118156
                            TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            rrk+ ++tkeq + Lee F++n++++ +e+e LA+ l+L+ rqV vWFqNrRa+ k
  SMil_00002306-RA_Salv  63 RRKKLRLTKEQSRLLEESFKQNHTLNPREKETLAEILSLKPRQVEVWFQNRRARSK 118
                            79999*************************************************98 PP
2HD-ZIP_I/II1171e-3764152189
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                            +kk+rl+keq++lLEesF+++++L+p++K++la+ L l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n++L+keveeLr
  SMil_00002306-RA_Salv  64 RKKLRLTKEQSRLLEESFKQNHTLNPREKETLAEILSLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLSEQNRKLHKEVEELR 151
                            69*************************************************************************************9 PP

            HD-ZIP_I/II  89 e 89 
                            +
  SMil_00002306-RA_Salv 152 A 152
                            3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-2038121IPR009057Homeodomain-like
SuperFamilySSF466891.92E-2052121IPR009057Homeodomain-like
PROSITE profilePS5007118.17260120IPR001356Homeobox domain
SMARTSM003891.1E-1862124IPR001356Homeobox domain
PfamPF000463.1E-1663118IPR001356Homeobox domain
CDDcd000869.75E-1863121No hitNo description
PROSITE patternPS00027095118IPR017970Homeobox, conserved site
SMARTSM003401.3E-15120163IPR003106Leucine zipper, homeobox-associated
PfamPF021831.7E-9120152IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MENCHSAPFC LELTIGFSSS SFLSPGESTM KELDINQVPS SGTEEECMEE EEEGESPNGG  60
PARRKKLRLT KEQSRLLEES FKQNHTLNPR EKETLAEILS LKPRQVEVWF QNRRARSKLK  120
QTEMECEYLK RWFGSLSEQN RKLHKEVEEL RAINVHGHGH LPPPASALSM CPRCERVTAA  180
ANTKMSHLRH RQPPAACFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112120RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070725.12e-73homeobox-leucine zipper protein HOX3
SwissprotQ0JKX13e-63HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH383e-63HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A4D8YBP01e-101A0A4D8YBP0_SALSN; Homeobox-leucine zipper protein
STRINGGLYMA20G01770.11e-71(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.14e-59homeobox-leucine zipper protein 17