PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002362-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ARR-B
Protein Properties Length: 641aa    MW: 71429.4 Da    PI: 6.7654
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002362-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like74.41.5e-23284337155
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            k+r++Wt +LH++Fv+av+ + G ek  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  SMil_00002362-RA_Salv 284 KARVVWTVDLHQKFVKAVNLI-GFEKVGPKKILDLMGVPWLTRENVASHLQKYRL 337
                            68*****************99.9*******************************8 PP
2Response_reg83.66e-281062141109
                            EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
           Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                            vl+vdD+p+ +++l+++l+k +y ev+++  ++eal+ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + +
  SMil_00002362-RA_Salv 106 VLVVDDDPTWLKILEKMLKKCNY-EVTTCNLAREALDLLRERKdgFDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRV 191
                            89*********************.***************999999**********************6644.8*************** PP

                            HHHHHTTESEEEESS--HHHHHH CS
           Response_reg  87 lealkaGakdflsKpfdpeelvk 109
                             + ++ Ga d+l Kp+ ++el++
  SMil_00002362-RA_Salv 192 MKGVQHGACDYLLKPIRMKELRN 214
                            ********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.85E-36103227IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.1E-44103227No hitNo description
SMARTSM004484.6E-33104216IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.79105220IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.5E-25106215IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.92E-31107220No hitNo description
SuperFamilySSF466897.53E-17282341IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-26283342IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-21284337IPR006447Myb domain, plants
PfamPF002491.5E-7286336IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
QIFDVLFLAL PIKIHTFLYF SSSLSHSLSC LSLTYYNCQE GIIYIRSANT YALVFVYLSV  60
ASHTATRSLF FCPFPPSCKI RPPLFLMDSS GFSSPRTDCF PAGLRVLVVD DDPTWLKILE  120
KMLKKCNYEV TTCNLAREAL DLLRERKDGF DIVISDVNMP DMDGFKLLEH VGLEMDLPVI  180
MMSVDGETSR VMKGVQHGAC DYLLKPIRMK ELRNIWQHVF RKRIHEVRDI EGHESLDEMM  240
LRGGADLSDD GFFFGGDPVS GKKRKDVDYK GDDRVGGDPS SLKKARVVWT VDLHQKFVKA  300
VNLIGFEKVG PKKILDLMGV PWLTRENVAS HLQKYRLYLS RLQKENELRA TLGGAKLSDS  360
SPKDAAAGGN AGLQTPVTKA SPCLKHDDPK SCEGNVKSMP IAEAKAAAEV NDLAKSSTSS  420
ISFDHSFGQL SSDAKSEPNI QVQYSWSAGA PPLPFKHEQK PPAAFKHEPK PPLQFKKEQP  480
LFIAEHHRFD HVPVAVAVQS KPSDTPSPAA TSKRSQHSEK ATKVESTAAL FCLQPESHLA  540
DSHTTIWNTK SSSQSLESLY DESWHRNALV GTGSPLMSDY SSQSDLYPPN PYLGPIDPFS  600
FNGQELFTDV HSHLYDSLKF NPEFPIDPVE YPVIDQGVYI A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-17280342163ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071178.10.0two-component response regulator ORR26
TrEMBLA0A4D8ZX820.0A0A4D8ZX82_SALSN; Two-component response regulator ARR-B family
STRINGVIT_01s0010g02230.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67882433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-116response regulator 11