PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002440-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C3H
Protein Properties Length: 342aa    MW: 38098.9 Da    PI: 8.5469
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002440-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.82.8e-11105129126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                            ykt++C  f++ G C+ G++C+FaHg
  SMil_00002440-RA_Salv 105 YKTRICAKFME-GSCRNGEQCTFAHG 129
                            9**********.*************9 PP
2zf-CCCH25.71.9e-08166188325
                            S---SGGGGTS--TTTTT-SS-S CS
                zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                            +++C+ ++ + +C+yGd+C+F H
  SMil_00002440-RA_Salv 166 MKICKKYYNGEECPYGDKCNFLH 188
                            579******66************ PP
3zf-CCCH35.91.2e-11229253126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                            +k+++C+++   G+C+yG+rC+FaHg
  SMil_00002440-RA_Salv 229 WKMRICSRWEM-GQCNYGERCHFAHG 253
                            89*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.0E-15101137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-9102135IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-6104130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.61104131IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-9105129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-7162191IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.995163191IPR000571Zinc finger, CCCH-type
SMARTSM003560.0042163190IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-6166188IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-8166189IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-13227258IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-8228258IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-7228254IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502228255IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8229253IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MQLRSPERSR MSFPDPTQPP NPFISPPYSG GDAAAAYWPP FWAGSEQQQQ HPDLMQQFHQ  60
SKKPRISEKA PNFAPFQPMN PRINQTNVPN PNPNPINKGT SHIFYKTRIC AKFMEGSCRN  120
GEQCTFAHGV EDLREPPPNW QELIREKERG NGGGGWGDDQ RMIHRMKICK KYYNGEECPY  180
GDKCNFLHER PSPPLKKLKV DMPGQRETSA ISIGVTGNTG ELDPAAPGWK MRICSRWEMG  240
QCNYGERCHF AHGNSELRFS GSIDEGESAA ATNAVSAARK VASVCAFPTP SAAAAAAAAP  300
TTGDGEEKRI SKWKLTKKIN RIYADWLDDL TPPHLSPTKE MT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078936.11e-158zinc finger CCCH domain-containing protein 39 isoform X1
SwissprotQ9LT811e-65C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A4D9C5W11e-176A0A4D9C5W1_SALSN; Uncharacterized protein
STRINGMigut.K00116.1.p1e-118(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65532434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-56C3H family protein