PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002541-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 185aa    MW: 20399.2 Da    PI: 10.8127
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002541-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.77e-192878155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           s++ GVr+++ +g+WvAeI+  +   ++ r +lg+f+taeeAa+a+++a+  l+g
  SMil_00002541-RA_Salv 28 SKFVGVRQRP-SGKWVAEIKNTT---QKIRMWLGTFDTAEEAARAYDEAACLLRG 78
                           79********.7******99932...36**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-142878IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-202887IPR016177DNA-binding domain
CDDcd000185.21E-342885No hitNo description
Gene3DG3DSA:3.30.730.107.5E-292986IPR001471AP2/ERF domain
SMARTSM003803.6E-362992IPR001471AP2/ERF domain
PROSITE profilePS5103219.6512986IPR001471AP2/ERF domain
PRINTSPR003671.9E-83041IPR001471AP2/ERF domain
PRINTSPR003671.9E-85268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MAPAMDLQFH GTSGHGTSRS RGRHSTRSKF VGVRQRPSGK WVAEIKNTTQ KIRMWLGTFD  60
TAEEAARAYD EAACLLRGSN ARTNFFNSIP CKPALSLKIR NLFNEKRGLN KASPSPPNQE  120
TNIVSPSLSQ TSGTNPTSCS NNNNISVLNP AYLEDAIKPH SSCFVGHTRR LPCLVAATWI  180
KFLHM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-162085571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the symbiotic nodule signaling pathway in response to rhizobial stimulation. Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation, and nodule development. May coordinate these processes (PubMed:28503742, PubMed:28028038, PubMed:28068194). Functions downstream of the CCAMK-CYCLOPS complex (PubMed:28503742, PubMed:28028038). Probably not involved in arbuscular mycorrhizal (AM) symbiosis (PubMed:28068194). {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28068194, ECO:0000269|PubMed:28503742}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in nodules 7 days after rhizobial inoculation. {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28503742}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089231.13e-58ethylene-responsive transcription factor RAP2-11-like
SwissprotA0A1X9PY881e-40ERN1_LOTJA; Ethylene-responsive transcription factor ERN1
TrEMBLA0A4D8YBI73e-68A0A4D8YBI7_SALSN; EREBP-like factor
STRINGMigut.D02583.1.p3e-45(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20182261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.17e-31related to AP2 11
Publications ? help Back to Top
  1. Yano K, et al.
    Function and evolution of a Lotus japonicus AP2/ERF family transcription factor that is required for development of infection threads.
    DNA Res., 2017. 24(2): p. 193-203
    [PMID:28028038]
  2. Kawaharada Y,James EK,Kelly S,Sandal N,Stougaard J
    The Ethylene Responsive Factor Required for Nodulation 1 (ERN1) Transcription Factor Is Required for Infection-Thread Formation in Lotus japonicus.
    Mol. Plant Microbe Interact., 2017. 30(3): p. 194-204
    [PMID:28068194]
  3. Cerri MR, et al.
    The ERN1 transcription factor gene is a target of the CCaMK/CYCLOPS complex and controls rhizobial infection in Lotus japonicus.
    New Phytol., 2017. 215(1): p. 323-337
    [PMID:28503742]