PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002676-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GATA
Protein Properties Length: 139aa    MW: 15417.7 Da    PI: 10.6348
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002676-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.91.2e-172761135
                   GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                           C+ C+tt TplWR gp g+k+LCnaCG++y kk++
  SMil_00002676-RA_Salv 27 CTDCRTTRTPLWRGGPHGPKSLCNACGIKYNKKRR 61
                           ********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.5E-112180IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.47E-122160No hitNo description
PROSITE profilePS5011412.6512156IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.9E-152561IPR013088Zinc finger, NHR/GATA-type
PfamPF003209.3E-162761IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402752IPR000679Zinc finger, GATA-type
CDDcd002022.45E-102779No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MDLKQDTQQI SEEKKNSSSS SSSPKSCTDC RTTRTPLWRG GPHGPKSLCN ACGIKYNKKR  60
RESLGLETGK NCRKKKRRGS ASGGGEDRSS EIREILKMRF MSFGSEVLLQ RSRKLMSKLR  120
EEEQAAILLM ALSCGSVSA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15877KRRESLGLETGKNCRKKKRR
27377KKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082433.11e-60GATA transcription factor 15-like
SwissprotQ9FJ101e-27GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A2G9G6U22e-59A0A2G9G6U2_9LAMI; Uncharacterized protein
STRINGMigut.D00108.1.p4e-56(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85032229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.14e-26GATA transcription factor 15
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]