PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002825-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 62aa    MW: 7064.33 Da    PI: 4.9116
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002825-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.92e-071041132
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                           +g W +eEd+ll ++++ +G g W++++ + g
  SMil_00002825-RA_Salv 10 KGMWIPEEDDLLRKCIETYGEGKWHLVPIRAG 41
                           688************************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-7640IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-9737IPR009057Homeodomain-like
PfamPF002494.7E-61041IPR001005SANT/Myb domain
CDDcd001671.09E-41336No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 62 aa     Download sequence    Send to blast
METNPLGVRK GMWIPEEDDL LRKCIETYGE GKWHLVPIRA GILLSEPITY PPWASITCPP  60
LM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073629.19e-15transcription factor MYB114
TrEMBLW8EB731e-14W8EB73_ERYLE; Anthocyanin-activating R2R3 MYB transcription factor
STRINGMigut.L00458.1.p7e-14(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66380.18e-16myb domain protein 114