PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002826-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 149aa    MW: 16574.9 Da    PI: 9.1479
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002826-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.73.5e-1020471847
                           HTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding 18 qlGggtWktIartmgkgRtlkqcksrwqky 47
                            +G++ W++Ia +++ gRt++++k++w+++
  SMil_00002826-RA_Salv 20 NYGSR-WSLIAGRLP-GRTANDVKNYWNSH 47
                           69999.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.51E-81951IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-121948IPR009057Homeodomain-like
PROSITE profilePS500906.5971948IPR017877Myb-like domain
PfamPF002493.0E-82047IPR001005SANT/Myb domain
CDDcd001673.80E-62148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MNGSGSGSGS LXGTYNQNNN YGSRWSLIAG RLPGRTANDV KNYWNSHIEK KETLMGRVRA  60
QKSITRSNII RPRPRTFSAS SHTGNGNGNQ PPPSRHDADE CTRWWTNLLQ MAADNHPQLG  120
GEAAHREEDF TDFAIDVDIW KLLSFGDQA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073629.11e-30transcription factor MYB114
TrEMBLA0A2G9HBC24e-27A0A2G9HBC2_9LAMI; Uncharacterized protein
STRINGMigut.L00458.1.p9e-26(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1832223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56650.13e-18production of anthocyanin pigment 1