PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00002845-RA_Salv

Common Name

SPL3

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

SBP

Protein Properties

Length: 189aa MW: 20659.3 Da PI: 9.9819

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00002845-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.6	2.7e-41	57	131	2	76
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 Cq+e+C+adl+ ak yhrrhkvCe+h+ka+v++v+g++qrfCqqCsrfhelsefD++krsCrrrLa+hnerrrk+ SMil_00002845-RA_Salv 57 CQAEKCSADLAAAKAYHRRHKVCEHHAKAQVAVVAGIRQRFCQQCSRFHELSEFDDAKRSCRRRLAGHNERRRKN 131 *************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.6E-33	49	118	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.351	54	131	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.53E-37	56	134	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.4E-31	57	130	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010321	Biological Process	regulation of vegetative phase change
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MMMNEGKPMK GKMMKRDCAA AAAADSDDDE LTPEDDKRKR VAGAKKGGGG GGDMKSCQAE 60 KCSADLAAAK AYHRRHKVCE HHAKAQVAVV AGIRQRFCQQ CSRFHELSEF DDAKRSCRRR 120 LAGHNERRRK NPGDGSQAEG STSGRIKGGG GTTAGGHQLK EMVCGQVDDR GRIQMTVQEN 180 STYKHFHVR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-36	47	130	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16914499}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00634	PBM	Transfer from PK22320.1	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305\|PubMed:12202040, ECO:0000305\|PubMed:16914499}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF437879	0.0	KF437879.1 Salvia miltiorrhiza SQUAMOSA promoter binding protein-like 3 (SPL3) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002275728.1	1e-71	PREDICTED: squamosa promoter-binding protein 1 isoform X2
Swissprot	Q9S7A9	9e-44	SPL4_ARATH; Squamosa promoter-binding-like protein 4
TrEMBL	A0A075FES2	1e-134	A0A075FES2_SALMI; SQUAMOSA promoter binding protein-like 3 (Fragment)
STRING	VIT_12s0028g03350.t01	5e-71	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA749	24	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.2	5e-40	squamosa promoter binding protein-like 4

Publications ? help Back to Top
Zhang L, et al. Genome-wide analysis and molecular dissection of the SPL gene family in Salvia miltiorrhiza. J Integr Plant Biol, 2014. 56(1): p. 38-50 [PMID:24112769] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Hyun Y, et al. Site-directed mutagenesis in Arabidopsis thaliana using dividing tissue-targeted RGEN of the CRISPR/Cas system to generate heritable null alleles. Planta, 2015. 241(1): p. 271-84 [PMID:25269397] Xu M, et al. Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana. PLoS Genet., 2016. 12(8): p. e1006263 [PMID:27541584] Ioannidi E, et al. Trichome patterning control involves TTG1 interaction with SPL transcription factors. Plant Mol. Biol., 2016. 92(6): p. 675-687 [PMID:27631431] Jung JH,Lee HJ,Ryu JY,Park CM SPL3/4/5 Integrate Developmental Aging and Photoperiodic Signals into the FT-FD Module in Arabidopsis Flowering. Mol Plant, 2016. 9(12): p. 1647-1659 [PMID:27815142]