PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00002880-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bHLH

Protein Properties

Length: 346aa MW: 38435.3 Da PI: 4.5773

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00002880-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.8	0.00022	295	334	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RRd+i + + L++++P a ++K + + +A++Y++sL SMil_00002880-RA_Salv 295 RSRRDKIHETVSILQSIIPDA----NGKDA-IVVIDQAIHYLRSL 334 89******************9....67765.77889999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.537	285	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.02E-5	291	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.7E-5	295	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MEKHFGSGYD QHLLSSTLNL SGFPFTNGYL NMEPLHRYPY PVEDSTLRNL PPVPGSGFQQ 60 LKASEPNRLQ NWFDHKQHFH QAFVPASNSA SEQKFPAGLS DVERLRSPTI PGQKRFLVFD 120 QSGDKTTLLY SSGVHAPIQF GASQLPNPPS TYNLGKEELR DSYYSLGLND ENFEDNSKDA 180 TEDEMHEDTE ELDALLCSDD DSDFSEDEET STGHSPSTMT DNGIPKLVEE TGEEVDSFSV 240 PAKRQKLLDG SDVAPSSRYD GSSLKTFAYS ELESDAESSC GSRKEELYIR SGCKRSRRDK 300 IHETVSILQS IIPDANGKDA IVVIDQAIHY LRSLKVKAKA LGLDAL

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MEKHFGSGYD QHLLSSTLNL SGFPFTNGYL NMEPLHRYPY PVEDSTLRNL PPVPGSGFQQ  60
LKASEPNRLQ NWFDHKQHFH QAFVPASNSA SEQKFPAGLS DVERLRSPTI PGQKRFLVFD  120
QSGDKTTLLY SSGVHAPIQF GASQLPNPPS TYNLGKEELR DSYYSLGLND ENFEDNSKDA  180
TEDEMHEDTE ELDALLCSDD DSDFSEDEET STGHSPSTMT DNGIPKLVEE TGEEVDSFSV  240
PAKRQKLLDG SDVAPSSRYD GSSLKTFAYS ELESDAESSC GSRKEELYIR SGCKRSRRDK  300
IHETVSILQS IIPDANGKDA IVVIDQAIHY LRSLKVKAKA LGLDAL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077451.2	1e-141	transcription factor bHLH143
TrEMBL	A0A4D8YHW6	0.0	A0A4D8YHW6_SALSN; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4942	5	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	9e-08	phytochrome interacting factor 3