PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002970-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 206aa    MW: 22602.4 Da    PI: 9.4741
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002970-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.13e-20113163155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            ++++GVr+++ +g+W AeIrdp     r +r++lg+f+taeeAa a+++a  +++g
  SMil_00002970-RA_Salv 113 KKFRGVRQRP-WGKWSAEIRDPA----RrARVWLGTFDTAEEAAMAYDKASIEIRG 163
                            59********.**********82....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.44E-30113170No hitNo description
Gene3DG3DSA:3.30.730.104.9E-31114170IPR001471AP2/ERF domain
PfamPF008473.0E-14114163IPR001471AP2/ERF domain
PROSITE profilePS5103223.67114171IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-22114170IPR016177DNA-binding domain
SMARTSM003807.0E-37114177IPR001471AP2/ERF domain
PRINTSPR003677.8E-12115126IPR001471AP2/ERF domain
PRINTSPR003677.8E-12137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MSSRHLPIKY SEQKIVTTKF LPCSGAAAAD TAPYHPPRVV RIFVTDGDAT DSSGDECDHS  60
CGRQVRRHVN EIRLERENTA AAVKKAATEG ARKKKKRPAP ARPGAGNEEG KGKKFRGVRQ  120
RPWGKWSAEI RDPARRARVW LGTFDTAEEA AMAYDKASIE IRGPDAVTNF LKPPQREAEE  180
TTVAEECSGK EEGYGLADFG FGVFGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-23111170262ATERF1
3gcc_A5e-23111170262ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19196RKKKKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012844004.16e-57PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLA0A4D9AEC82e-76A0A4D9AEC8_SALSN; Uncharacterized protein
STRINGMigut.B01832.1.p2e-56(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-39cytokinin response factor 4