PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002992-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WOX
Protein Properties Length: 182aa    MW: 20571.9 Da    PI: 11.97
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002992-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.71.5e-063971233
                           T--SS--HHHHHHHHHHHHH.SSS--HHHHHHH CS
               Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeL 33
                           ++R+++ +eq+ +Le+ F++   +p ++e++++
  SMil_00002992-RA_Salv 39 KPRWNPRSEQIWILEAIFNSgMVNPPRDEIRRI 71
                           89*****************99*********998 PP
2Wus_type_Homeobox45.91.3e-153873237
      Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqrita 37
                           +++RW+P++eQi iLe++++sG+++P+++ei+ri+a
  SMil_00002992-RA_Salv 38 PKPRWNPRSEQIWILEAIFNSGMVNPPRDEIRRIKA 73
                           689*******************************97 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010075Biological Processregulation of meristem growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MGALFTKQVR WPHDINSISS NKSPYAQGHG CDERTPEPKP RWNPRSEQIW ILEAIFNSGM  60
VNPPRDEIRR IKANGGRLRE DREEAARRIE IQGWGGLEFR RRVGPGKAER RTGGGGAAES  120
KAERRTFSSP ASQQWRSNAA ACAAPSVSEQ QCSGGGGRQQ RRRTRRRGRG RGRGRERERE  180
KK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159165QRRRTRR
2168180RGRGRGREREREK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.11e-22homeobox-3