PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00003007-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family Trihelix
Protein Properties Length: 173aa    MW: 20058.1 Da    PI: 7.8226
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00003007-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix79.74.1e-2546129186
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                            +W+ +e+++ +++r +++ ++ ++k++k lWe vs +m + g++r+p+qCk+kw+nl +ryk ++++e+ +   +++ +p++++++
  SMil_00003007-RA_Salv  46 QWSSEETRDFLAIRGDLDPTFMETKRNKLLWELVSTRMNQIGYNRTPIQCKCKWKNLVTRYKGCETMEEVE--MRERAFPFYKEMQ 129
                            7********************************************************************85..56667******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.1E-2145129No hitNo description
CDDcd122031.17E-2545110No hitNo description
SuperFamilySSF466893.43E-545122IPR009057Homeodomain-like
PROSITE profilePS500907.28247103IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
LVDFLIFKIK LFIFMYMDHS QFSQVQNPYV GVSVETGLGC GDRNPQWSSE ETRDFLAIRG  60
DLDPTFMETK RNKLLWELVS TRMNQIGYNR TPIQCKCKWK NLVTRYKGCE TMEEVEMRER  120
AFPFYKEMQI IFNARMQRMM WQEVEGGAIS PQMVSKAANS GCSSGNSSAV VMD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095020.15e-56trihelix transcription factor GT-3b
RefseqXP_020553261.15e-56trihelix transcription factor GT-3b
SwissprotO804501e-44TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBLA0A2G9HJ935e-55A0A2G9HJ93_9LAMI; Uncharacterized protein
STRINGMigut.L02020.1.p6e-52(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41872343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.19e-47Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]