PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00003108-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 193aa    MW: 21156.8 Da    PI: 10.4081
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00003108-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643e-2062111255
                    AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             y+GVr ++ +grW AeIrd       r r++lg+f+tae+Aa+a++aa+++l+g
  SMil_00003108-RA_Salv  62 SYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEDAARAYDAAARRLRG 111
                            69*******.**********32....25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.83E-1461118No hitNo description
Gene3DG3DSA:3.30.730.109.7E-3062119IPR001471AP2/ERF domain
SMARTSM003801.1E-3262125IPR001471AP2/ERF domain
PROSITE profilePS5103222.39262119IPR001471AP2/ERF domain
PfamPF008478.0E-1462111IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2262120IPR016177DNA-binding domain
PRINTSPR003671.2E-106374IPR001471AP2/ERF domain
PRINTSPR003671.2E-1085101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MLRNDSLFPK VEKEKAEMLH LYFRQNPPAL EGIAAVVGER VLFGAADETG EKPVVDSAVQ  60
KSYRGVRKRP WGRWSAEIRD RIGRCRHWLG TFDTAEDAAR AYDAAARRLR GSKARTNFHI  120
PSVLPPPSSS SSNSSSSERR KRKRVSGGGT ARKCSVVTSA ANLFGRDPAD DGGGRAVSLE  180
LDLKIDDGGL VEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1761120464ATERF1
3gcc_A3e-1761120464ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138143RRKRKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016670238.11e-51PREDICTED: ethylene-responsive transcription factor ERF084-like
RefseqXP_017609636.12e-51PREDICTED: ethylene-responsive transcription factor ERF084-like
RefseqXP_017978247.12e-51PREDICTED: ethylene-responsive transcription factor ERF084
TrEMBLA0A4D8Z4605e-65A0A4D8Z460_SALSN; EREBP-like factor
STRINGEOY259768e-51(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA115522225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.15e-24ERF family protein