PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00003119-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HSF
Protein Properties Length: 354aa    MW: 41057.1 Da    PI: 10.7481
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00003119-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.22e-36861782103
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl+k+++++ed+++++++sws+ g+sfvv+d++ f+++vLp+yFkh+nf+SFvRQLn+YgF+k+++++         weF+++ F +g
  SMil_00003119-RA_Salv  86 FLTKTFDVVEDSSTDDVVSWSRGGHSFVVWDPHAFSTTVLPRYFKHNNFSSFVRQLNTYGFRKIDTDK---------WEFANEAFLRG 164
                            9****************************************************************999.........*********** PP

                            XXXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkkse 103
                            +k+ll++i+r+k++
  SMil_00003119-RA_Salv 165 QKHLLKNIRRRKTS 178
                            ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.3E-3982175IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.72E-3582175IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.9E-6082175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-1986109IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-3286175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-19124136IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340125149IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-19137149IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
LSPSLIGNSC PLRGFFIPLL SFNWSTTFRN RSNLIYVFVE ASEIEYKLMF PVKDEYQGAS  60
SSWPESSDQA APQPMDGLHE MGPPPFLTKT FDVVEDSSTD DVVSWSRGGH SFVVWDPHAF  120
STTVLPRYFK HNNFSSFVRQ LNTYGFRKID TDKWEFANEA FLRGQKHLLK NIRRRKTSPP  180
QLPPAQQAAP FIELGNFGRD AEVDGLRRDK LVLVTELVKL RQQQQVTRAH LQQMEQRLQS  240
TETKQQQMMS FLARAMQNPE FIHQLVHHKE KRKELEEAIS KKRRRPIEAA ESSRVKAEPL  300
ECGGPKLQNL RCWLWRCRGL VRGKRRRRWR PMRSITSSTM GSGRNCLVRG LIKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-268417818123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270284KRKELEEAISKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079918.11e-136heat stress transcription factor A-7a
SwissprotQ9LUH81e-104HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A2G9GNX31e-130A0A2G9GNX3_9LAMI; Heat shock transcription factor
STRINGEMJ017951e-119(Prunus persica)
STRINGXP_009631618.11e-117(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.12e-96heat shock transcription factor A6B