PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00003180-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bHLH

Protein Properties

Length: 214aa MW: 24274.1 Da PI: 7.3945

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00003180-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.5	1.1e-08	109	156	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ Lr+++P + k + a +L + ++Y++sLq SMil_00003180-RA_Salv 109 SHSLAERVRRGKINERLRCLRDIVPGC----YKTMGMAVMLDEIINYVQSLQ 156 8***********************9....35599999********998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.44E-16	103	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.45E-10	103	160	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.2E-16	105	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.301	105	155	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.8E-6	109	156	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-8	111	161	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MADYHQLILK ESFDPDVELI NNLSASGLFQ NHDDFNFHNS ILPTHHEFDD HKQRNKTKAS 60 TPAESTCSYQ SHHTANQQRQ RRGGRAKKEE EKGGEVIHVR AKRGQATDSH SLAERVRRGK 120 INERLRCLRD IVPGCYKTMG MAVMLDEIIN YVQSLQNQVE FLSMKLTAAS SFYDFNSDTD 180 AIEAMQRANA IEAIKAGNVA NPCAHLPHNF GYYP

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP257529	0.0	KP257529.1 Salvia miltiorrhiza clone 96 basic helix-loop-helix transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016567559.1	7e-66	PREDICTED: transcription factor BEE 3-like
Swissprot	Q8GWK7	3e-61	BEE3_ARATH; Transcription factor BEE 3
TrEMBL	A0A0H3YBV0	1e-161	A0A0H3YBV0_SALMI; Basic helix-loop-helix transcription factor
STRING	Bostr.3288s0027.1.p	1e-65	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3971	23	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18400.1	4e-62	BR enhanced expression 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]