PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00003305-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family M-type_MADS
Protein Properties Length: 161aa    MW: 18934.8 Da    PI: 9.733
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00003305-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.43.9e-181048240
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                            i n+ +r+vtf kR  g+lKKA+ELS+LC+++va++i 
  SMil_00003305-RA_Salv 10 EIPNEDRRNVTFRKRTDGLLKKANELSILCGIDVAIVIH 48
                           689**********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.586147IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-15160IPR002100Transcription factor, MADS-box
CDDcd002662.05E-19282No hitNo description
SuperFamilySSF554551.11E-19292IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-10323IPR002100Transcription factor, MADS-box
PfamPF003195.0E-171148IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MTRKRIKHEE IPNEDRRNVT FRKRTDGLLK KANELSILCG IDVAIVIHRK EQSNVVLWPS  60
PPIFGERLQK FMESRNEGRE RRIATHESFM EQMVQGEMED VVKLKKAIQI KESQQLVLNS  120
LQTNSFDGFR VDQLNAMNSF ADHMLKKLQL KDHQLNDIHE Q
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A4D9C2F65e-76A0A4D9C2F6_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.26e-18M-type_MADS family protein