PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00003375-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NF-YB

Protein Properties

Length: 167aa MW: 18319.4 Da PI: 5.8555

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00003375-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	167.4	1.8e-52	42	138	1	97
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 +req+r+lPianv+rimk++lP nakisk+aket+qec+sefisfvt+easdkc++ekrkt+ngdd++wal++lGf+dy ++lk yl SMil_00003375-RA_Salv 42 MREQERLLPIANVGRIMKQILPPNAKISKEAKETMQECASEFISFVTGEASDKCHKEKRKTVNGDDICWALGSLGFDDYGDSLKRYLV 129 58************************************************************************************ PP NF-YB 89 kyrelegek 97 +yre+ege+ SMil_00003375-RA_Salv 130 RYREAEGER 138 ****997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.2E-50	38	147	IPR009072	Histone-fold
SuperFamily	SSF47113	9.83E-38	45	145	IPR009072	Histone-fold
Pfam	PF00808	1.4E-27	48	112	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.9E-17	76	94	No hit	No description
PROSITE pattern	PS00685	0	79	95	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	2.9E-17	95	113	No hit	No description
PRINTS	PR00615	2.9E-17	114	132	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MVDNIGPNHS SRQRGLRSSY TSYAASVAAV SGGGGDEDEG GMREQERLLP IANVGRIMKQ 60 ILPPNAKISK EAKETMQECA SEFISFVTGE ASDKCHKEKR KTVNGDDICW ALGSLGFDDY 120 GDSLKRYLVR YREAEGERAA NQNKAPAAPD DGGLPFSFDL MEKRRIN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	2e-43	42	133	1	92	Transcription factor HapC (Eurofung)
4g92_B	2e-43	42	133	1	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	3e-69	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011079712.1	2e-74	nuclear transcription factor Y subunit B-5-like
Swissprot	O82248	6e-56	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	A0A4D8YJR5	2e-87	A0A4D8YJR5_SALSN; Uncharacterized protein
STRING	XP_008368975.1	7e-69	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	5e-58	nuclear factor Y, subunit B5

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]