PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00003523-RA_Salv

Common Name

MYB34

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

MYB

Protein Properties

Length: 234aa MW: 27290.6 Da PI: 8.4705

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00003523-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.5	6.3e-18	17	64	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++vk G g+W+ +ar g++R +k+c++rw +yl SMil_00003523-RA_Salv 17 KGPWTAEEDRLLIEYVKSNGEGRWNNVARLAGLKRNGKSCRLRWVNYL 64 79********************************************97 PP
2	Myb_DNA-binding	52.1	1.5e-16	70	114	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ SMil_00003523-RA_Salv 70 RGQITPHEERIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 114 7888****************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.973	12	68	IPR017930	Myb domain
SuperFamily	SSF46689	3.34E-30	14	111	IPR009057	Homeodomain-like
SMART	SM00717	6.8E-16	16	66	IPR001005	SANT/Myb domain
Pfam	PF00249	2.4E-16	17	64	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-23	18	71	IPR009057	Homeodomain-like
CDD	cd00167	4.26E-11	19	64	No hit	No description
PROSITE profile	PS51294	19.962	69	119	IPR017930	Myb domain
SMART	SM00717	6.4E-15	69	117	IPR001005	SANT/Myb domain
Pfam	PF00249	6.2E-14	70	114	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-24	72	115	IPR009057	Homeodomain-like
CDD	cd00167	2.91E-10	74	115	No hit	No description
Gene3D	G3DSA:1.20.1000.10	9.7E-4	116	163	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
LMSWGMGWGA IDEGWRKGPW TAEEDRLLIE YVKSNGEGRW NNVARLAGLK RNGKSCRLRW 60 VNYLRPDLKR GQITPHEERI ILELHARWGN RWSTIARSLP GRTDNEIKNY WRTHFKKKCN 120 SSSDSAEKTR ARLLRRQQFQ LQQQQQQQEQ QHEQDQIDMK KIITSLLDDH ENGVPGLAHP 180 TVSDEQGLLY SVISNCPTTA PEEEVVWDGL WNLEGLHGNY IAGKPNFQQN LDFY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	9e-28	17	119	27	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF059388	0.0	KF059388.1 Salvia miltiorrhiza MYB-related transcription factor (MYB34) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022849439.1	4e-98	transcription factor WER-like
Refseq	XP_022849440.1	4e-98	transcription factor WER-like
TrEMBL	A0A059PRE4	1e-169	A0A059PRE4_SALMI; MYB-related transcription factor
STRING	cassava4.1_013947m	3e-92	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24310.1	2e-79	myb domain protein 305

Publications ? help Back to Top
Li C,Lu S Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza. BMC Genomics, 2014. 15: p. 277 [PMID:24725266]