PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00003526-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 175aa    MW: 19721.4 Da    PI: 9.9932
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00003526-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-161764148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg+WT+eEd+ +  av+ +G ++W+tIa+  g+ R +k+c+ rw +yl
  SMil_00003526-RA_Salv 17 RGPWTAEEDQEITAAVAVHGAKQWATIAASSGLSRGAKSCRVRWMNYL 64
                           89********************************************97 PP
2Myb_DNA-binding48.61.9e-1570111548
                            -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            + +E++l+++++k+lG++ W++Ia++++ gRt++++k++w  +l
  SMil_00003526-RA_Salv  70 SDQEEDLIIRLHKLLGNR-WSLIAARLP-GRTDNEIKNYWKHHL 111
                            889***************.*********.***********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-181070IPR009057Homeodomain-like
PROSITE profilePS5129425.6721268IPR017930Myb domain
SuperFamilySSF466896.97E-2914107IPR009057Homeodomain-like
SMARTSM007171.4E-131666IPR001005SANT/Myb domain
PfamPF002494.9E-141764IPR001005SANT/Myb domain
CDDcd001679.85E-101964No hitNo description
SMARTSM007177.3E-1167113IPR001005SANT/Myb domain
PROSITE profilePS5129416.52869115IPR017930Myb domain
CDDcd001673.31E-1169111No hitNo description
PfamPF002497.6E-1470110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-2071111IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010090Biological Processtrichome morphogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0048629Biological Processtrichome patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MVASTSIKEK QRPSKKRGPW TAEEDQEITA AVAVHGAKQW ATIAASSGLS RGAKSCRVRW  60
MNYLRPNIMS DQEEDLIIRL HKLLGNRWSL IAARLPGRTD NEIKNYWKHH LSKKRLEKGV  120
VVAGISSDQH KGTSVSSKSV EISVSEAKID DFFDFSNEHP STLEWVTKFL EFGDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25131143107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079754.12e-76transcription factor MYB114-like
SwissprotQ9LTF75e-44MYB82_ARATH; Transcription factor MYB82
TrEMBLA0A0K1ETI21e-74A0A0K1ETI2_TECGR; MYB transcription factor 3
STRINGMigut.I01072.1.p8e-71(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.16e-46myb domain protein 82