PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00003557-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

SRS

Protein Properties

Length: 198aa MW: 21584.8 Da PI: 8.1051

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00003557-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	167.2	8.9e-52	4	141	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstk 90 s +++CqdCGnqakkdC+h+RCRtCCksrg++C thvkstWvp+a+rr r++ +++ ++ +a+ ++ + + ++ SMil_00003557-RA_Salv 4 SSSSRCQDCGNQAKKDCEHSRCRTCCKSRGLQCPTHVKSTWVPVAQRRPRHNVMQQHHQISATVEQLYH-------------GPNPKR 78 56789******************************************97665554333322222222.............222223 PP DUF702 91 lssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++ + le ++P ev +a+frcvrvssvd+ + +aYqt+v+i+Gh+f G+LydqG++ SMil_00003557-RA_Salv 79 YRENRAALGLEEGDFPGEVCFPAIFRCVRVSSVDNVVDSYAYQTSVNISGHLFTGFLYDQGPS 141 33444566788889*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.6E-54	6	141	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.6E-26	9	50	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	6.9E-23	93	140	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
SSSSSSSRCQ DCGNQAKKDC EHSRCRTCCK SRGLQCPTHV KSTWVPVAQR RPRHNVMQQH 60 HQISATVEQL YHGPNPKRYR ENRAALGLEE GDFPGEVCFP AIFRCVRVSS VDNVVDSYAY 120 QTSVNISGHL FTGFLYDQGP SEPEGTGNYV TGGSSSAAIG FLQQPHFLNS TSAAATGTTP 180 SPYPSSFCAF TSTSSQFF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011092834.1	4e-77	protein SHI RELATED SEQUENCE 3-like
Swissprot	Q9XGX0	6e-49	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A4D8YQ67	1e-129	A0A4D8YQ67_SALSN; Uncharacterized protein
STRING	XP_009785993.1	1e-67	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4156	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	2e-44	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]