PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00003821-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bZIP
Protein Properties Length: 180aa    MW: 20720.8 Da    PI: 6.5148
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00003821-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.29.9e-1565115555
                            CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                            +++rr+++NRe+ArrsR RK+  ++eL   v  L +eN++L+++l++ ++ 
  SMil_00003821-RA_Salv  65 RKQRRMISNRESARRSRMRKQRHLDELWSQVLRLRTENHSLIEKLNHVSES 115
                            79********************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-1661125IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.10563126IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.1E-1265138No hitNo description
PfamPF001701.8E-1265115IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.22E-1265115No hitNo description
CDDcd147028.56E-1866117No hitNo description
PROSITE patternPS0003606883IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MIQSEFQELN YFSPAESLPS FPGSFCLKQS SSGFLRNLQG NYPSPNSTSN STSDEADDQQ  60
AIDERKQRRM ISNRESARRS RMRKQRHLDE LWSQVLRLRT ENHSLIEKLN HVSESHDRVV  120
QENAKLKEEA SDLRQMLTDI QISNSYAIFR DLDDIPCNTA YLRAESSSNH SVTTSSNLLH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17784RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077776.14e-83basic leucine zipper 43
SwissprotQ9FMC22e-38BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A4D8ZGQ44e-89A0A4D8ZGQ4_SALSN; Uncharacterized protein
STRINGPOPTR_0008s11260.12e-66(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9472492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.12e-45basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]