PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00003916-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Dof

Protein Properties

Length: 266aa MW: 29274.7 Da PI: 9.3124

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00003916-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.5	1.7e-39	27	86	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + +kcprCds ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknkk + SMil_00003916-RA_Salv 27 DPPVKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKIK 86 6789*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.7E-33	29	84	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	8.0E-26	30	84	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.236	30	84	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	32	68	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MSPLPGGKDE SQSSSTRKAS SSSRAQDPPV KCPRCDSPNT KFCYYNNYSL TQPRHFCKTC 60 RRYWTKGGAL RNVPIGGGCR KNKKIKRLPA DSKDSDVPLK FAMDFQLPNP SLSNSSPHSH 120 TPCFNLDPSS LMGFAFPLKQ GQNLGFQEMV HHTNLATSIE SLSSINQDLH WKLQQQRLAT 180 LFVENATHKE ASGNIQFQSL PENPKTDSCL IGTSRKDGSF SNNTDTFLNN SPPTPHPAGN 240 NFNGAAGNWS GGIQAWTELS HYTSLP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK376388	7e-53	AK376388.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3122H18.
GenBank	AM084360	7e-53	AM084360.1 Hordeum vulgare subsp. vulgare dof12 gene for dof zinc finger protein 12, exons 1-2.
GenBank	EU947524	7e-53	EU947524.1 Zea mays clone 346044 mRNA sequence.
GenBank	KJ726977	7e-53	KJ726977.1 Zea mays clone pUT3678 C2C2-DOF transcription factor (DOF32) gene, partial cds.
GenBank	KJ726997	7e-53	KJ726997.1 Zea mays clone pUT3969 C2C2-DOF transcription factor (DOF24) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097460.1	4e-87	dof zinc finger protein DOF5.7-like
Swissprot	Q9LSL6	3e-57	DOF57_ARATH; Dof zinc finger protein DOF5.7
TrEMBL	A0A4D8ZTM8	2e-92	A0A4D8ZTM8_SALSN; Uncharacterized protein
STRING	EOX91892	3e-75	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5242	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	6e-47	Dof family protein

Publications ? help Back to Top
Castorina G,Fox S,Tonelli C,Galbiati M,Conti L A novel role for STOMATAL CARPENTER 1 in stomata patterning. BMC Plant Biol., 2016. 16(1): p. 172 [PMID:27484174]