PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00003958-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C3H
Protein Properties Length: 208aa    MW: 22929.3 Da    PI: 10.4249
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00003958-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.63.3e-065174225
                           -S---SGGGGTS--TTTTT-SS-S CS
                zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                           k ++C  f+ t  C++Gd C+F H
  SMil_00003958-RA_Salv 51 KSKPCTKFFSTSGCSFGDACHFQH 74
                           7789*******************9 PP
2zf-CCCH25.91.7e-08111136227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                            kt+lC++      C+yG++C+FaH++
  SMil_00003958-RA_Salv 111 KTKLCNRLKTPEGCRYGNKCHFAHSE 136
                            99**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.874976IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.9674977IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-65079IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-45174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-65174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-13107141IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-8108140IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.07109137IPR000571Zinc finger, CCCH-type
SMARTSM003560.52109136IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-5111136IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MDFGRKRGRA DAAFSGNGGF KRSREVESHL IRDMAYVSVE MDSFTTGVGS KSKPCTKFFS  60
TSGCSFGDAC HFQHYVPGYN AHTQLANMGV NVAAPVGRNT SFSDSPAPNM KTKLCNRLKT  120
PEGCRYGNKC HFAHSEMELG KPATPGFEDQ RMRGGYSNAM RHPNMLWVTL VRQQLRKSAL  180
TPPLLGLLLG KMVPTQSRFV GRLVLSFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
139GRKRGRA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087061.12e-75zinc finger CCCH domain-containing protein 14 isoform X1
SwissprotQ7F8R01e-37C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A022QHP99e-67A0A022QHP9_ERYGU; Uncharacterized protein
STRINGMigut.B01362.1.p2e-67(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.13e-26C3H family protein