PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00003984-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 228aa    MW: 25858.4 Da    PI: 7.5461
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00003984-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.6e-1061112154
                            CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                            +++ah   E++RR+++ + ++ Lr+llP       ++K   ++   +A +YI+++
  SMil_00003984-RA_Salv  61 KKTAHRFTEKQRRQEMTTLYASLRSLLPLeY---IKGKRAVSDHMDQAANYINDM 112
                            799**************************77...999***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-1257128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.08760112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.88E-860117No hitNo description
PfamPF000108.4E-761112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-961128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MFPISSDGVI EDPWIFLEQD GFLLADIPIL EGNEHPQNSV KKRPRKAPTS AGVEENSSDS  60
KKTAHRFTEK QRRQEMTTLY ASLRSLLPLE YIKGKRAVSD HMDQAANYIN DMKKKIEEMK  120
RRRESLRNVA GTAAEAQNQT SNATDYCVKI NVFTDGVEIL ISSSLNKDCF PLSMVLSDLL  180
NRQLHVINCV STRGQRCYLH KIHIQLNNST SIDVAELQER LVDLLQLA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574630.0KP257463.1 Salvia miltiorrhiza clone 30 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076269.11e-77transcription factor bHLH36-like
TrEMBLA0A0H3Y8T51e-170A0A0H3Y8T5_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.F01201.1.p1e-48(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.15e-28bHLH family protein