PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00004035-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family M-type_MADS
Protein Properties Length: 78aa    MW: 9112.48 Da    PI: 10.2325
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00004035-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF102.81.2e-322575151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey++
  SMil_00004035-RA_Salv 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN 75
                           79***********************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.5431777IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-411776IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-301876IPR002100Transcription factor, MADS-box
CDDcd002653.85E-381876No hitNo description
PRINTSPR004044.7E-341939IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PfamPF003197.8E-282673IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-343954IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-345475IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MELQSDQSRE MSSERKIGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LIVFSSRGRL YEYANNRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-211776160Myocyte-specific enhancer factor 2B
1tqe_Q2e-211776160Myocyte-specific enhancer factor 2B
1tqe_R2e-211776160Myocyte-specific enhancer factor 2B
1tqe_S2e-211776160Myocyte-specific enhancer factor 2B
6c9l_A2e-211776160Myocyte-specific enhancer factor 2B
6c9l_B2e-211776160Myocyte-specific enhancer factor 2B
6c9l_C2e-211776160Myocyte-specific enhancer factor 2B
6c9l_D2e-211776160Myocyte-specific enhancer factor 2B
6c9l_E2e-211776160Myocyte-specific enhancer factor 2B
6c9l_F2e-211776160Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6991778e-56JQ699177.1 Nicotiana benthamiana agamous (AG) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019169239.16e-46PREDICTED: floral homeotic protein AGAMOUS isoform X1
RefseqXP_019169240.16e-46PREDICTED: floral homeotic protein AGAMOUS isoform X1
SwissprotQ408858e-45AG_PETHY; Floral homeotic protein AGAMOUS
TrEMBLA0A4D8ZQW97e-45A0A4D8ZQW9_SALSN; MADS-box transcription factor, plant
TrEMBLA0A4D9AML11e-44A0A4D9AML1_SALSN; MADS-box transcription factor, plant
STRINGMigut.M00986.1.p1e-43(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.22e-30MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]