PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00004393-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 148aa    MW: 16204.5 Da    PI: 8.45
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00004393-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.63.4e-0637721454
                           HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                           ++i ++++ L++l+ +      +K + a++L +A+eYI+ L
  SMil_00004393-RA_Salv 37 EKISERISALQQLVSPY-----GKTDTASVLLEAMEYIRFL 72
                           5899***********99.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.9E-102281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.8772372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-122986IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-43178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.92E-73177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MMQHKRGPIS LEQSSFVDIM PKRLKTDESL SSKEKKEKIS ERISALQQLV SPYGKTDTAS  60
VLLEAMEYIR FLHEQVKVLS APYLYSTPTQ LQGEEGSSLS ARGLCVVPVS FTVGVVSSNG  120
ADIWAPIKTS PTNSKRAISD EASVITQS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091561.12e-86transcription factor bHLH113 isoform X2
RefseqXP_011091562.12e-86transcription factor bHLH113 isoform X2
SwissprotQ7XJU23e-52BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A4D9C2D22e-94A0A4D9C2D2_SALSN; Uncharacterized protein
STRINGMigut.N03067.1.p4e-82(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10428811
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.52e-39bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]