PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00004434-RA_Salv
Common NameMYB75
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 229aa    MW: 26694.5 Da    PI: 6.3984
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00004434-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.61e-111865148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg+WT eEd +l   +   G  +W+ +++  g+ R++k+c++rw +yl
  SMil_00004434-RA_Salv 18 RGPWTIEEDHKLMIFILNNGIQCWRMVPKLAGLLRCGKSCRLRWINYL 65
                           89******************************99************97 PP
2Myb_DNA-binding53.65.2e-1771114146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg++++ E+ ++++++++lG++ W++Ia++++ gRt++++k++w++
  SMil_00004434-RA_Salv  71 RGAFSEIEENQIIELHARLGNR-WSKIASHFP-GRTDNEIKNHWNT 114
                            899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-20968IPR009057Homeodomain-like
PROSITE profilePS5129414.4671365IPR017930Myb domain
SuperFamilySSF466898.24E-2815112IPR009057Homeodomain-like
SMARTSM007178.4E-41767IPR001005SANT/Myb domain
PfamPF002491.3E-91865IPR001005SANT/Myb domain
CDDcd001670.006272065No hitNo description
PROSITE profilePS5129426.05166120IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-2569120IPR009057Homeodomain-like
SMARTSM007179.3E-1770118IPR001005SANT/Myb domain
PfamPF002498.5E-1671114IPR001005SANT/Myb domain
CDDcd001672.28E-1173114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
LVTKMGRQPC CDKIGLKRGP WTIEEDHKLM IFILNNGIQC WRMVPKLAGL LRCGKSCRLR  60
WINYLRPDLK RGAFSEIEEN QIIELHARLG NRWSKIASHF PGRTDNEIKN HWNTKIKKKL  120
RLLGINPVTH QPVDKKQEIV EQNEQEKVDG LEESKGDDRN DVVESCQSET SSDHLMNNYE  180
IMSTITNMDM DTFSLQASFK LMDYSTHVEE WVEGVDSMIF WDGIDQQLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28161205108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114120KIKKKLR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00510DAPTransfer from AT5G14340Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594290.0KF059429.1 Salvia miltiorrhiza MYB-related transcription factor (MYB75) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554906.12e-98myb-related protein 315-like
SwissprotP813942e-81MYB15_ANTMA; Myb-related protein 315
TrEMBLA0A059PRV01e-167A0A059PRV0_SALMI; MYB-related transcription factor
STRINGVIT_14s0219g00050.t011e-93(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.12e-82myb domain protein 40
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]