PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00004489-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 220aa    MW: 22810 Da    PI: 7.8139
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00004489-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.000676385123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ykC+ Cgk F ++  L  H  +H
  SMil_00004489-RA_Salv 63 YKCSVCGKGFQSHQALGGHKASH 85
                           9**********999999998887 PP
2zf-C2H217.98.4e-06127149123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C+ Cg+sF++   L  H+r+H
  SMil_00004489-RA_Salv 127 HECSTCGRSFPSGQALGGHMRKH 149
                            78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.2E-96185No hitNo description
Gene3DG3DSA:3.30.160.601.4E-46187IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0116385IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.4456390IPR007087Zinc finger, C2H2
PfamPF139124.3E-116387IPR007087Zinc finger, C2H2
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SuperFamilySSF576671.2E-9122149No hitNo description
Gene3DG3DSA:3.30.160.606.8E-4126151IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.949127151IPR007087Zinc finger, C2H2
SMARTSM003550.0058127149IPR015880Zinc finger, C2H2-like
PfamPF139121.0E-12127151IPR007087Zinc finger, C2H2
PROSITE patternPS000280129149IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MSLEALNPAA PPHRRFDDYG CRRAKRSKRV SDDEYLAGCL VALRSGGEPS SSKSSPSSTD  60
RIYKCSVCGK GFQSHQALGG HKASHRSKPP TVAVAAEEER KPSSNSTSTA TTDASNDQPA  120
PGPHRLHECS TCGRSFPSGQ ALGGHMRKHY GGVIGGSKSA VNSSDGGNGD GFSVVTSFSG  180
SGAVSCSYGD GDGDGDVTAV PRNLDLNLPS QEELDLALKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092508.18e-54zinc finger protein AZF2-like
TrEMBLA0A4D8ZMY42e-98A0A4D8ZMY4_SALSN; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.24e-23zinc-finger protein 2