PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00004603-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

BBR-BPC

Protein Properties

Length: 339aa MW: 37334.2 Da PI: 9.7583

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00004603-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	275.7	2.3e-84	1	309	1	293
GAGA_bind 1 mdddgsre.rnkgyyepa.aslkenlglqlmssiaerdaki..................rernlalsekkaavaerd.....maflqr 63 md +g+++ rn+g+ ep +s+k++lglql++s+ae+ + + + s + ++++++ +++ SMil_00004603-RA_Salv 1 MDGNGNMNfRNWGFLEPPaSSMKNQLGLQLITSMAEKPLFGgggggggggggfrdhqhlHPSPVMSSINGGPFHHHRvggisESHIPV 88 999***********8889**********9877665999***9975544433444233333444555479999899999 PP GAGA_bind 64 dkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkk 151 d ++++ ++k+l++l+v+++ a + ++++v+++++s++s+q+ ++ +l++ ++e+e++ +++ ++ + kk SMil_00004603-RA_Salv 89 DYWMNQ-------SREKYLNVLPVNHQPAYYQ-SSYGVSPESSSAHSVQMPQQFNLQKAENVMSEMEEMCEEKDDGGCSSGGAVVVKK 168 **.......7889**999866555.7899*********88877777666667776666655555555666666666 PP GAGA_bind 152 krqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCttti 239 ++ ++ ++ ++k+kk++ +++ + +++ ++ + +r++ +kk ++v+ng+++D+s +P+PvCsCtGa++qCY+WG+GGWqSaCCtt + SMil_00004603-RA_Salv 169 RGGSKVTNSTPKEKKPRTRTPRPPRDEPTPPS-SRARIPKKRAEIVINGINMDISEIPIPVCSCTGAPQQCYRWGSGGWQSACCTTHM 255 66666777778888888888888777777764.79************************************************* PP GAGA_bind 240 SvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHG 293 S yPLP s krrgaRiagrKmS gafkk+LekLa+eGy++s p+DL++hWAkH SMil_00004603-RA_Salv 256 SEYPLPPSDKRRGARIAGRKMSIGAFKKVLEKLASEGYNFSSPIDLRSHWAKHA 309 ***************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	5.1E-88	1	309	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	2.0E-104	1	308	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MDGNGNMNFR NWGFLEPPAS SMKNQLGLQL ITSMAEKPLF GGGGGGGGGG GGFRDHQHLH 60 PSPVMSSING GPFHHHRVGG ISESHIPVDY WMNQSREKYL NVLPVNHQPA YYQSSYGVSP 120 ESSSAHSVQM PQQFNLQKAE NVMSEMEEMC EEKDDGGCSS GGAVVVKKRG GSKVTNSTPK 180 EKKPRTRTPR PPRDEPTPPS SRARIPKKRA EIVINGINMD ISEIPIPVCS CTGAPQQCYR 240 WGSGGWQSAC CTTHMSEYPL PPSDKRRGAR IAGRKMSIGA FKKVLEKLAS EGYNFSSPID 300 LRSHWAKHAW RFWVVTNYSA SRIELHFPEF LPPGARGRF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011083223.1	1e-162	protein BASIC PENTACYSTEINE2-like
TrEMBL	A0A4D8XS11	0.0	A0A4D8XS11_SALSN; Uncharacterized protein
TrEMBL	A0A4D9AJW2	0.0	A0A4D9AJW2_SALSN; Uncharacterized protein
STRING	XP_009761371.1	1e-106	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10048	20	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	3e-73	basic pentacysteine 2