PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00004649-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 259aa    MW: 29014.1 Da    PI: 6.6666
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00004649-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.57.1e-182979155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           s++ GVr+++ +g+WvAeI+  +   ++ r +lg+f+taeeAa a+++a+  l+g
  SMil_00004649-RA_Salv 29 SKFVGVRQRP-SGKWVAEIKNTT---QKIRMWLGTFDTAEEAALAYDEAACLLRG 79
                           79********.7******99932...36**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.83E-322986No hitNo description
PfamPF008473.4E-132979IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-192987IPR016177DNA-binding domain
SMARTSM003801.6E-343093IPR001471AP2/ERF domain
PROSITE profilePS5103218.9793087IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-273087IPR001471AP2/ERF domain
PRINTSPR003677.9E-83142IPR001471AP2/ERF domain
PRINTSPR003677.9E-85369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MELHFHSSSS TNSNNHTTYK STNRSPSKSK FVGVRQRPSG KWVAEIKNTT QKIRMWLGTF  60
DTAEEAALAY DEAACLLRGS NTRTNFLNTM PCNPALSLKI KNLLNQKRSQ NKAISPPTSA  120
TRYTDQDVNG KAIDTTTSSS SSSQYTTNES FSSNQIQMEG SLDFTSNPCE DAYKPDFSHF  180
TPGYEMITPH FNLDKAADAP RRGANEAPSF SDFERMKVER QISASLYAMN GINEYWDTIN  240
DSNDALWDIQ TLCQMFCPS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089231.11e-101ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A4D8Z8631e-130A0A4D8Z863_SALSN; EREBP-like factor
TrEMBLA0A4D9A4W91e-130A0A4D9A4W9_SALSN; EREBP-like factor
STRINGMigut.D02554.1.p5e-74(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20182261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-40related to AP2 11