PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00004677-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Dof

Protein Properties

Length: 136aa MW: 15155.9 Da PI: 9.0493

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00004677-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	105.4	3.2e-33	41	101	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e++l+cprC+stntk+CyynnyslsqPryfCk+Crry t+GG+lrnvP G+g+ knk+ss SMil_00004677-RA_Salv 41 NEQTLNCPRCNSTNTKLCYYNNYSLSQPRYFCKTCRRYRTEGGSLRNVPDGSGSCKNKRSS 101 68999****************************************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-22	40	99	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-27	43	99	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	25.332	45	99	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
MNEEGEEVLE LRNLQSTTQT QSSKPSNGGA AAAEKKPWSK NEQTLNCPRC NSTNTKLCYY 60 NNYSLSQPRY FCKTCRRYRT EGGSLRNVPD GSGSCKNKRS SPAPPFILAN KPLPDPNFSP 120 QNPKIQEGHD LNLFGL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022887009.1	5e-40	dof zinc finger protein DOF4.6-like
Swissprot	Q43385	9e-30	DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBL	A0A4D8ZWA9	8e-44	A0A4D8ZWA9_SALSN; Uncharacterized protein
STRING	VIT_16s0098g01420.t01	9e-36	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.1	7e-32	Dof family protein