PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00004711-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family M-type_MADS
Protein Properties Length: 162aa    MW: 18669.4 Da    PI: 8.06
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00004711-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF565.1e-181762247
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                           +ie +   + tfskRr+g++KK +ELS LCda+v +++fs+tgk +
  SMil_00004711-RA_Salv 17 KIEKENDCYATFSKRRQGLFKKGSELSSLCDADVGLLVFSPTGKPF 62
                           5788888899*********************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-25867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.413868IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.24E-23976IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-161030IPR002100Transcription factor, MADS-box
PfamPF003191.1E-211764IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-163045IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-164566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MDEKRTTKGR QKIAIAKIEK ENDCYATFSK RRQGLFKKGS ELSSLCDADV GLLVFSPTGK  60
PFSFFHPSME AVVSRLGSGG AHRDDASRLL EAFSRTRVLQ LNQMIDTIGE KLDDEVEREK  120
ELERERGACQ KWWEMPLENL DKEQVEQLMV SMRNLQLMLR TR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012827730.16e-55PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A4D9BXB22e-80A0A4D9BXB2_SALSN; Uncharacterized protein
STRINGMigut.D02159.1.p2e-54(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-27AGAMOUS-like 61