PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00004799-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 249aa    MW: 26261.4 Da    PI: 5.5885
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00004799-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.21.3e-1590138255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             y+G+r  ++ g+Wv+eIr+p++   ++r++lg++ ++e+Aa+a++ a+++l+g
  SMil_00004799-RA_Salv  90 IYRGIR--SRGGKWVSEIREPKK---TTRVWLGTYPSPEMAAAAYDVAALALKG 138
                            69***6..679*********854...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-989138IPR001471AP2/ERF domain
CDDcd000189.73E-1589147No hitNo description
SMARTSM003803.2E-2690152IPR001471AP2/ERF domain
PROSITE profilePS5103219.50690146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-2590147IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-1790148IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MSQQHNSPYP TPKPTTSPPP PPTPPPPPPA PLSPPPPPPP PHTNTVHSPK DQSQHSQPTI  60
GIESLPSPKK VKTTAAASSS VRPAGGKHPI YRGIRSRGGK WVSEIREPKK TTRVWLGTYP  120
SPEMAAAAYD VAALALKGPA TAVNFPDRVG EYPVPASPSP SDIRKAAASA AALMKPEEEA  180
PPVDETAAAD GNAETAAGEH EFIDEEALFH MPNLLVDMAE GMLVSPPRMA SPPSEDSPDN  240
SDVESLWSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1382146672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081034.12e-79ethylene-responsive transcription factor ERF026
SwissprotQ9CAN93e-49ERF26_ARATH; Ethylene-responsive transcription factor ERF026
TrEMBLA0A022RGU62e-76A0A022RGU6_ERYGU; Uncharacterized protein
TrEMBLA0A4D9A5J41e-76A0A4D9A5J4_SALSN; EREBP-like factor
STRINGMigut.A00921.1.p6e-77(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.11e-39ERF family protein