PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00004833-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 178aa    MW: 19670.1 Da    PI: 10.8624
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00004833-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-1886136255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                            +y+GVr+++ +g+++AeIrd      k +r++lg+f taeeAa a+ +a++++ g
  SMil_00004833-RA_Salv  86 DYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFETAEEAALAYNKAALRIIG 136
                            69*******.**********3...2234***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.52486144IPR001471AP2/ERF domain
SMARTSM003801.6E-3586150IPR001471AP2/ERF domain
PfamPF008473.1E-1386136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-3086145IPR001471AP2/ERF domain
CDDcd000188.75E-2587144No hitNo description
SuperFamilySSF541712.62E-2287145IPR016177DNA-binding domain
PRINTSPR003671.7E-118798IPR001471AP2/ERF domain
PRINTSPR003671.7E-11110126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MPTSAPPPTR SSSAPTAPPP NLETAIAALE ISQRGNHRRC GNRRERACRC SSYRRADRFS  60
PSAPSGVVLA TGARVSSEPP WLSNRDYRGV RRRPWGKYAA EIRDSSRKGA RVWLGTFETA  120
EEAALAYNKA ALRIIGPKTH LNFPLESVAK ASANHGAVGR DHHWKRAADL DEYELERL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2585145464ATERF1
3gcc_A5e-2585145464ATERF1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112371823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.12e-20ERF family protein