PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00004944-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 27458.2 Da    PI: 9.727
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00004944-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.11.7e-31959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krienk+nrqvtf+kRrng+lKKA+ELS+LCdaeva+iifss+gklye++s
  SMil_00004944-RA_Salv  9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSSKGKLYEFCS 59
                           79***********************************************96 PP
2K-box86.26.5e-298417311100
                  K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                              +++s++ e  kLk+++e Lq++qRhllGedL++  ++eL qLe  L++slk+iRsk++++++eq++ lq+kek+l ++n+aL+kkl
  SMil_00004944-RA_Salv  84 PDDEQSSYLECLKLKSRVEVLQQSQRHLLGEDLGKFGVRELDQLECVLDTSLKRIRSKQSQHMFEQLSGLQRKEKDLMDINRALQKKL 171
                            4567999********************************************************************************9 PP

                  K-box  99 ee 100
                            ee
  SMil_00004944-RA_Salv 172 EE 173
                            87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.501161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.22E-33275IPR002100Transcription factor, MADS-box
CDDcd002659.84E-44276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-33323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-333859IPR002100Transcription factor, MADS-box
PfamPF014867.3E-2484171IPR002487Transcription factor, K-box
PROSITE profilePS5129713.85687177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVALIIFSS KGKLYEFCSS  60
SSMTKTLERY HKSSYGLIEA QQSPDDEQSS YLECLKLKSR VEVLQQSQRH LLGEDLGKFG  120
VRELDQLECV LDTSLKRIRS KQSQHMFEQL SGLQRKEKDL MDINRALQKK LEEGSGSSQL  180
WGEANGNQAS PYRLQPSRPF VFFEPLVGSN SRQIRNNSQL VQNNAEGSAQ NVNAILPAWM  240
Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-21170169MEF2C
5f28_B7e-21170169MEF2C
5f28_C7e-21170169MEF2C
5f28_D7e-21170169MEF2C
6byy_A7e-21174173MEF2 CHIMERA
6byy_B7e-21174173MEF2 CHIMERA
6byy_C7e-21174173MEF2 CHIMERA
6byy_D7e-21174173MEF2 CHIMERA
6bz1_A8e-21174173MEF2 CHIMERA
6bz1_B8e-21174173MEF2 CHIMERA
6bz1_C8e-21174173MEF2 CHIMERA
6bz1_D8e-21174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable MADS-box transcription factor that functions with J2 and EJ2 in meristem maturation. {ECO:0000269|PubMed:28528644}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011102220.11e-109MADS-box protein CMB1-like
SwissprotK4BND84e-94MADS4_SOLLC; MADS-box protein 04g005320
TrEMBLA0A4D9BPC41e-141A0A4D9BPC4_SALSN; MADS-box transcription factor, plant
STRINGXP_009788435.16e-95(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.22e-82MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]