PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005093-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 172aa    MW: 18997.3 Da    PI: 4.3851
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005093-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.3e-181564255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           +y GVr++k +grWv+eIr+p   gk++r++lg+f+t+e+Aa+a++  + +l+g
  SMil_00005093-RA_Salv 15 RYIGVRRRK-WGRWVSEIREP---GKKTRIWLGSFDTPEMAAAAYDVSAWYLRG 64
                           699***998.**********8...557*******************99888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.89E-291474No hitNo description
SMARTSM003803.1E-351578IPR001471AP2/ERF domain
PfamPF008476.3E-121564IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-291573IPR001471AP2/ERF domain
PROSITE profilePS5103222.3921572IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-221573IPR016177DNA-binding domain
PRINTSPR003671.1E-81627IPR001471AP2/ERF domain
PRINTSPR003671.1E-83854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MIKQDKNEGA GTGARYIGVR RRKWGRWVSE IREPGKKTRI WLGSFDTPEM AAAAYDVSAW  60
YLRGPDARIN FPELVESLPK PASADADDIR QAAQLAAMRL GGVEQNVGSG GEAVPARVKL  120
SPSDIQAINE APLDSPKMWM ELAGPSGVEE PVSYGEIEME EWDETETYSI WD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-151377368ATERF1
3gcc_A4e-151377368ATERF1
5wx9_A2e-14973573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098959.11e-65ethylene-responsive transcription factor ERF022
TrEMBLA0A4D9A8A47e-98A0A4D9A8A4_SALSN; EREBP-like factor
STRINGPOPTR_0013s10340.14e-61(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-48ERF family protein