PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005106-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 211aa    MW: 23817.6 Da    PI: 5.7753
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005106-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.2e-2095145255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            +y+GVr+++ +g+++AeIrdp+ +g   r++lg+f+ta eAa+a+++a+ +++g
  SMil_00005106-RA_Salv  95 HYRGVRRRP-WGKYAAEIRDPKRRG--SRVWLGTFDTAAEAARAYDRAAFRMRG 145
                            69*******.**********96554..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.06E-2894153No hitNo description
SuperFamilySSF541711.18E-2395155IPR016177DNA-binding domain
PfamPF008475.9E-1595145IPR001471AP2/ERF domain
SMARTSM003801.7E-3795159IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-3395154IPR001471AP2/ERF domain
PROSITE profilePS5103224.68495153IPR001471AP2/ERF domain
PRINTSPR003673.9E-1196107IPR001471AP2/ERF domain
PRINTSPR003673.9E-11119135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MAFCDEVSAI ERIRMHLLGE FEFELEFESS ASSSSSSESG SPDSELFAAQ YVFDFDRNQK  60
LGSPPPAAKR LEWIEFGSGN SSDDGAAAVA EEQQHYRGVR RRPWGKYAAE IRDPKRRGSR  120
VWLGTFDTAA EAARAYDRAA FRMRGSKAIL NFPLEIQRER EAAAAGAGGK RRREEELELR  180
QQKMVKCETA EWEWAAPLIT PLCWHLPTHT S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-3094157467ATERF1
3gcc_A4e-3094157467ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012827321.12e-59PREDICTED: ethylene-responsive transcription factor 6-like
TrEMBLA0A411DXJ41e-105A0A411DXJ4_SALMI; AP2/ERF transcription factor
STRINGMigut.A01161.1.p8e-59(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9632389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.13e-28ethylene responsive element binding factor 6