PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00005193-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Dof

Protein Properties

Length: 286aa MW: 31125.8 Da PI: 8.8509

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00005193-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.1	4.6e-39	49	106	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+ SMil_00005193-RA_Salv 49 HPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRP 106 5789***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-28	45	105	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.0E-33	50	105	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	51	105	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	53	89	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MLGNCDNKII TPISSTTNQW PQNQIILDDH KSFMASSSTN KVMEKPDPHP LKCPRCDSSN 60 TKFCYYNNYS LSQPRHFCKA CKRYWTRGGT LRNVPVGGGC RKNKRPKRHS DAAAAASQPH 120 MDLPPPLPTI FSLLYDYDPP INPLGLGFSS GLGSAENAFK NGFKPIQEAS SSPFSSPANS 180 NSNSIFFGSS SASTMASLLA STHKFGAPGL IHYEDPGMGK QVKAEGENMH RMAWNPNPNQ 240 NQNPNLNTNP IDQINSSDPS SLVWNTSSVG AWFDPSTMGS SVPSLI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020554179.1	1e-101	LOW QUALITY PROTEIN: dof zinc finger protein DOF1.4-like
TrEMBL	A0A068TVZ0	2e-73	A0A068TVZ0_COFCA; Uncharacterized protein
STRING	VIT_10s0003g00040.t01	7e-71	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	6e-35	Dof family protein