PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005270-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family LBD
Protein Properties Length: 201aa    MW: 21740.2 Da    PI: 10.2504
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005270-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260742.9e-234135198
                 DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeer............................. 54 
                            +C++C+vlr++C ++C ++p++     p++q++++ +++k++G++ +++l++a p + r                             
  SMil_00005270-RA_Salv   4 SCNGCRVLRKGCGDNCSIRPCLewiksPDSQANATVFLAKFYGRAGLMNLINAGPSNLRpgpsallsisfqqipasiqylltylslrh 91 
                            6**************************************************************************************9 PP

                 DUF260  55 edamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                             ++++sl+yeA+ r+ +P+yG++g++++ ++ql+++++e++l++
  SMil_00005270-RA_Salv  92 AAIFRSLLYEACGRIVNPIYGSIGLLWSDSWQLCHSAVEAVLRG 135
                            99***********************************9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089111.3173138IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-9463IPR004883Lateral organ boundaries, LOB
PfamPF031958.6E-790131IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MRISCNGCRV LRKGCGDNCS IRPCLEWIKS PDSQANATVF LAKFYGRAGL MNLINAGPSN  60
LRPGPSALLS ISFQQIPASI QYLLTYLSLR HAAIFRSLLY EACGRIVNPI YGSIGLLWSD  120
SWQLCHSAVE AVLRGAPVTQ MTTEPKDGPP LKAYDIRHVN KEHKFPPPTT FAGSGTAAGS  180
SARGSGLGPR RLTSRLATIP R
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099556.16e-77LOB domain-containing protein 41
SwissprotQ9M8863e-70LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A4D9AKL11e-77A0A4D9AKL1_SALSN; Uncharacterized protein
STRINGXP_008230405.12e-73(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.13e-72LOB domain-containing protein 41