PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005464-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 206aa    MW: 23026.3 Da    PI: 9.0269
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005464-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH277.9e-091159254
                           HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                           ++ +  rE+ RRd++N+ f eL  ll ++     +K++K +i+  +++ +k+L
  SMil_00005464-RA_Salv 11 KVLKADREKLRRDKLNEQFLELGNLLDPD----RPKNDKGTIVSDTIQVLKEL 59
                           566789********************997....79***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.462959IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.82E-61064No hitNo description
SuperFamilySSF474591.02E-111078IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-121082IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-61159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-61565IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MEVGNALATR KVLKADREKL RRDKLNEQFL ELGNLLDPDR PKNDKGTIVS DTIQVLKELN  60
SEVKRLKKEH ALLCEETHEL TQEKNEIREE KASLKSSIQQ NLRAQQHQQT QGFVVPWDSQ  120
LLMAPSYPFP IAVPMHHRAA QVPPLFANAT PTTYIPYLTP AMPRVDQPAA LNVSASGPRA  180
GTANSTDVAT DLELKIPGSK VEHKKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574900.0KP257490.1 Salvia miltiorrhiza clone 57 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028774542.17e-59transcription factor bHLH121-like
RefseqXP_028775242.17e-59transcription factor bHLH121-like
SwissprotQ9LT234e-43BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A0H3YC441e-150A0A0H3YC44_SALMI; Basic helix-loop-helix transcription factor
STRINGEMJ061006e-58(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2483922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.13e-46bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]