PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005564-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 219aa    MW: 24560.4 Da    PI: 6.5064
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005564-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.6e-161763248
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           g+W++ Ed++l++ ++++G  +W++ ++  g+ R++k+c++rw +yl
  SMil_00005564-RA_Salv 17 GPWSPAEDLRLINFIQKHGHSNWRALPKQAGLLRCGKSCRLRWINYL 63
                           89*****************************99************97 PP
2Myb_DNA-binding52.11.5e-1669114148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg++T+eE+  ++++++  G++ W++Ia++++ gRt++++k+ w+++l
  SMil_00005564-RA_Salv  69 RGNFTPEEENTIIQLHNSIGNK-WSKIASCLP-GRTDNEIKNVWNTHL 114
                            89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.5281163IPR017930Myb domain
SuperFamilySSF466893.79E-3014110IPR009057Homeodomain-like
SMARTSM007171.9E-111565IPR001005SANT/Myb domain
PfamPF002495.9E-151663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-231770IPR009057Homeodomain-like
CDDcd001676.42E-101863No hitNo description
PROSITE profilePS5129422.0964118IPR017930Myb domain
SMARTSM007172.1E-1468116IPR001005SANT/Myb domain
PfamPF002492.5E-1569114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-2771117IPR009057Homeodomain-like
CDDcd001671.41E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MGGGRAPCCD KTKVRTGPWS PAEDLRLINF IQKHGHSNWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDVKRG NFTPEEENTI IQLHNSIGNK WSKIASCLPG RTDNEIKNVW NTHLKKRGNC  120
KKKSDDEESS PAEKQAASSV SHSPKHALPE VGDDDDFWHV LAPLLHDDDD DDNNVGAEEV  180
EIGKWLRILE NELGLSGDAQ PEILVDFSAS QSDHHYLGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-27171175104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. {ECO:0000269|PubMed:19122102}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by UV light (PubMed:9839469). Triggered by salicylic acid and jasmonic acid (PubMed:16463103). Regulated by the SND1 close homologs NST1, NST2, VND6, and VND7 and their downstream targets MYB46 and MYB83 (PubMed:19122102, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:22197883, ECO:0000269|PubMed:9839469}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0593910.0KF059391.1 Salvia miltiorrhiza MYB-related transcription factor (MYB37) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022028696.18e-78transcription factor MYB58-like
SwissprotQ6R0A65e-71MYB63_ARATH; Transcription factor MYB63
TrEMBLA0A059PRQ71e-124A0A059PRQ7_SALMI; MYB-related transcription factor
STRINGGLYMA15G41255.12e-73(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.13e-73myb domain protein 58
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Noda S, et al.
    The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63.
    Planta, 2015. 242(3): p. 589-600
    [PMID:26070439]
  3. Vargas L, et al.
    Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.
    Biotechnol Biofuels, 2016. 9: p. 139
    [PMID:27390589]