PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005650-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 275aa    MW: 31842.3 Da    PI: 7.2345
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005650-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12e-182067148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg+WT eEd  l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  SMil_00005650-RA_Salv 20 RGPWTVEEDFTLINYIAHHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 67
                           89********************************************97 PP
2Myb_DNA-binding51.62.2e-1673116146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  SMil_00005650-RA_Salv  73 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 116
                            7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.2251567IPR017930Myb domain
SuperFamilySSF466896.36E-3117114IPR009057Homeodomain-like
SMARTSM007173.1E-151969IPR001005SANT/Myb domain
PfamPF002491.5E-162067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-222174IPR009057Homeodomain-like
CDDcd001673.98E-112267No hitNo description
PROSITE profilePS5129423.24668122IPR017930Myb domain
SMARTSM007171.3E-1472120IPR001005SANT/Myb domain
PfamPF002494.3E-1573116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-2375121IPR009057Homeodomain-like
CDDcd001678.00E-793116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEQRGKVRGD YSEEEMELRR GPWTVEEDFT LINYIAHHGE GRWNSLARCA GLKRTGKSCR  60
LRWLNYLRPD VRRGNITLEE QLLILELHSR WGNRWSKIAQ HLPGRTDNEI KNYWRTRVQK  120
HAKQLKCDVN SKQFKDTMRY LWMPRLVERI QAAASSAPAA PPPPPPYPLN TPNSSSSSSF  180
GQPTNNMVAS QTTPDNSSAS ESTENYAVIH NQEYSYPPNH NSCYADQQSL TNQTDFFNQG  240
LDFNTQWIMD DTAAAHNLWD VDDIWLLQQQ FNNNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-251711424120MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027944.11e-111PREDICTED: transcription factor MYB108-like
SwissprotQ9FGY39e-90MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A059PRD91e-111A0A059PRD9_SALMI; MYB-related transcription factor
TrEMBLA0A0N6X6W61e-110A0A0N6X6W6_SALMI; R2R3-MYB transcription factor An
STRINGXP_006488792.11e-109(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13972375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-88myb domain protein 78
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]