PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005819-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NF-YB
Protein Properties Length: 178aa    MW: 19029.3 Da    PI: 6.7884
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005819-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB182.14.5e-5725122198
                  NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 
                            vreqdrflPian++rimkk lP+n+ki+kdak+tvqecvsefisfvtseasdkcq+ekrktingddllwa+atlGfedy++plkvyl+
  SMil_00005819-RA_Salv  25 VREQDRFLPIANIGRIMKKGLPQNGKIAKDAKDTVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIAPLKVYLA 112
                            69************************************************************************************** PP

                  NF-YB  89 kyrelegekk 98 
                            +yreleg++k
  SMil_00005819-RA_Salv 113 RYRELEGDTK 122
                            *******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.3E-5221130IPR009072Histone-fold
SuperFamilySSF471131.16E-3928130IPR009072Histone-fold
PfamPF008082.4E-283195IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006156.4E-205977No hitNo description
PROSITE patternPS0068506278IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006156.4E-207896No hitNo description
PRINTSPR006156.4E-2097115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MADSPGGHGS HDNGGGGDHS PQSSVREQDR FLPIANIGRI MKKGLPQNGK IAKDAKDTVQ  60
ECVSEFISFV TSEASDKCQK EKRKTINGDD LLWAMATLGF EDYIAPLKVY LARYRELEGD  120
TKGSARGADG APKRDTVGTQ LGSDAQALLL KASATLTPKS NINSFLAESV SGYNVQLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A2e-4724116193NF-YB
4awl_B1e-4724116294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A1e-4724116294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4184790.0DQ418479.1 Salvia miltiorrhiza transcription factory NF-YB mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077038.13e-85nuclear transcription factor Y subunit B-1
RefseqXP_020548913.13e-85nuclear transcription factor Y subunit B-1
SwissprotQ8VYK43e-75NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLQ1W9Y21e-108Q1W9Y2_SALMI; Transcription factory NF-YB
STRINGPOPTR_0008s04440.15e-78(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.31e-70nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]