PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00005835-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

LBD

Protein Properties

Length: 215aa MW: 22647.7 Da PI: 7.0082

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00005835-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	28.5	4.4e-09	60	99	56	95
DUF260 56 damsslvyeAearardPvyGavgvilklqqqleqlkaela 95 ++++sl+yeA+ r+ +Pv+G+vg+++++ + +++++e++ SMil_00005835-RA_Salv 60 KIFRSLLYEACGRIINPVHGSVGLMSSGDWPRCHAAVEAV 99 689***************************9999998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	3.7E-5	60	97	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MAAEFSAKAA AKIAVSNLVS SGLTHPNLKP TPPCFSPNST AAPASSTSSP PPLLIAAPVK 60 IFRSLLYEAC GRIINPVHGS VGLMSSGDWP RCHAAVEAVL GGVHLVSPCD IRHAPKGRDR 120 RKRSTSSAAA ESEAKFTITG WDHNKDLLVI DEKSGRAPSH DSFSAETVEP SLVSFDDQGT 180 IPEPRLSEVG LELSLGLNPV LHTYLSAVIH ISDSQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070804.1	1e-51	LOB domain-containing protein 40-like
Swissprot	Q9CA30	1e-17	LBD42_ARATH; LOB domain-containing protein 42
TrEMBL	A0A4D9BQG8	3e-68	A0A4D9BQG8_SALSN; Uncharacterized protein
STRING	Migut.E00341.1.p	2e-38	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68510.1	2e-17	LOB domain-containing protein 42