PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005875-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HB-other
Protein Properties Length: 281aa    MW: 30667.5 Da    PI: 4.9885
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005875-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.23.2e-0917482354
                           SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
               Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRak 54
                           ryps +++  LA+++gL+ +qV++WF N R +
  SMil_00005875-RA_Salv 17 RYPSDADKHLLARQTGLSRNQVSNWFINARVR 48
                           8*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.078152IPR001356Homeobox domain
SMARTSM003891.1E-4456IPR001356Homeobox domain
SuperFamilySSF466899.84E-131559IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.0E-181758IPR009057Homeodomain-like
CDDcd000865.01E-101753No hitNo description
PfamPF059204.0E-131848IPR008422Homeobox KN domain
Gene3DG3DSA:1.10.10.606.7E-7142162IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MQASLSRKGS CETKYYRYPS DADKHLLARQ TGLSRNQVSN WFINARVRLW KPMVEEMYQQ  60
EAKDESGNEQ ERDQSSGSAQ TPTPHTATTS ATTAITPPPP NRSDSAHDND PSFVAINTHC  120
FTDNHAADDM QPPPPPAADA LVSNWFINAR VRLWKPMVEE MYQQEAKDES GNEQERDQSS  180
GSAQTPTPHT ATTSATTAIT PPPPNRSDSA HDNDPSFVAI NTHCFTDNHA ADDMQPPPPP  240
AADALVRFGA NAGDVSLTLG LRHAGNLPEK SPFSVRDFGG C
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A4D9AA299e-45A0A4D9AA29_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1566322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.25e-24BEL1-like homeodomain 2