PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005971-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NF-YC
Protein Properties Length: 151aa    MW: 17217.2 Da    PI: 6.5037
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005971-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC68.51.1e-211633899
                  NF-YC 38 misaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr.tdifdflvdivprd 99
                           mis ++P+l+ kace+f++el++r+w+h++ n+r+t++++d+a a+   ++   fl d+vp +
  SMil_00005971-RA_Salv  1 MISGDTPALFGKACEIFVMELSVRAWMHTQLNNRKTVQRNDVAYAIRDdATLLAFLDDVVPLE 63
                           8*********************************************86256789******977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.0E-16161IPR009072Histone-fold
SuperFamilySSF471131.75E-13161IPR009072Histone-fold
PfamPF008087.0E-8246IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MISGDTPALF GKACEIFVME LSVRAWMHTQ LNNRKTVQRN DVAYAIRDDA TLLAFLDDVV  60
PLESHHEPQV SINHHHGVYV PHPFTNQSLL EGGGRPDHDH HLPFPINLHH NYNPDAHVHM  120
GRSGGEQHIN HNFPPSYDGT NPYLTFKEFF Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B7e-161613594NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099518.13e-35nuclear transcription factor Y subunit C-3-like isoform X1
RefseqXP_011099519.13e-35nuclear transcription factor Y subunit C-3-like isoform X1
TrEMBLA0A4D8Z3625e-29A0A4D8Z362_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1762144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.21e-19nuclear factor Y, subunit C4