PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005975-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family Trihelix
Protein Properties Length: 287aa    MW: 32915.4 Da    PI: 5.2339
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005975-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.75.7e-221994171
               trihelix  1 rWtkqevlaLiearremeerlrrgk.....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71
                           rW++qe+l+Lie++r+ eer r+g+     + +++W+ vs+++r+ g++r+p+qC+++w+nl  ++kki++++++ 
  SMil_00005975-RA_Salv 19 RWSRQETLVLIEGKRQAEERGRNGRrstsdQVEAKWDYVSSHCRRNGVNRGPIQCRKRWSNLLSDFKKIQTWDSSV 94
                           8********************97644444499****************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.5031281IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.0E-51585IPR009057Homeodomain-like
PfamPF138371.0E-111892No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MARGEQSPVD SNKTPRHPRW SRQETLVLIE GKRQAEERGR NGRRSTSDQV EAKWDYVSSH  60
CRRNGVNRGP IQCRKRWSNL LSDFKKIQTW DSSVEAEGEG EGEGESFWMM RSDFRRERKL  120
PGFFDRQVYD VLDGKDFAGA AYQLALVTVS AYEDDGDGLD DEDEMVDSEE AEEASPGKEK  180
LQQDDTIPSP VPISEMKYQP SNANQATGKK NFWRDKDGVK KRKRVNNEVD SILINALERN  240
NELLRAQLED QKSNFQLARE EHKEQHERLV AALTKITGAL EKIADKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213222RDKDGVKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083005.11e-103trihelix transcription factor ASR3-like
TrEMBLA0A4D9AB951e-138A0A4D9AB95_SALSN; Uncharacterized protein
STRINGMigut.D01185.1.p2e-81(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-48Trihelix family protein