PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00006077-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 260aa    MW: 29909.1 Da    PI: 8.7986
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00006077-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.4e-055781123
                           EEET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                           ++C    Cgk+F+  s Lk+H  +H
  SMil_00006077-RA_Salv 57 HVCLehGCGKVFKYLSKLKNHEDSH 81
                           5777779**************9888 PP
2zf-C2H217.89.3e-06148172223
                            EET..TTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                            kC+   C+ +Fs+ snL++Hi+  H
  SMil_00006077-RA_Salv 148 KCSfkGCTLTFSTTSNLHQHIKAvH 172
                            688999***************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-64981IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.4325786IPR007087Zinc finger, C2H2
SMARTSM003550.145781IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805981IPR007087Zinc finger, C2H2
SMARTSM003554.689114IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028091114IPR007087Zinc finger, C2H2
SMARTSM003559.3117138IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.9E-6128169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.54E-8128185No hitNo description
PROSITE profilePS5015711.094147177IPR007087Zinc finger, C2H2
SMARTSM003550.011147172IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280149172IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-4171201IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035522178204IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280180204IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MREAANVTLN GSVPGGGPPE KLHQVCLSHA CYSLRVIWTR HVKEFHDESA STKVKQHVCL  60
EHGCGKVFKY LSKLKNHEDS HVKLDSVEAF CADPGCMKYF SNEQCLKEHI RSCHQHITCD  120
QCGTRQLKKN IKRHMRMHEE GPSSERIKCS FKGCTLTFST TSNLHQHIKA VHLELKPFVC  180
GMPGCHERFA FKHVRNRHEQ TGCHIYTPGN FDESDLQFRS RPRGGRKRKY PVIETLLRKR  240
IVPPSESELV SNDEYENSSW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220228RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079244.11e-124transcription factor IIIA
SwissprotQ84MZ44e-88TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A4D8ZUK61e-144A0A4D8ZUK6_SALSN; General transcription factor IIIA
STRINGMigut.K00168.1.p1e-120(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36442447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.14e-91transcription factor IIIA