PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00006114-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

LBD

Protein Properties

Length: 163aa MW: 18561.2 Da PI: 6.8435

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00006114-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.3	1.5e-39	12	110	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+l+r+C+++C +apyf +++p++f vhk+FGasnv+k+l+++ ee+re+a++slv+eAe+r++dPvyG++g i +lq+++ SMil_00006114-RA_Salv 12 SCAACKFLKRRCTANCQFAPYFRSDEPRRFVKVHKVFGASNVSKILNEVAEEQREEAVNSLVFEAEVRLQDPVYGCIGAIASLQHKMV 99 6************************************************************************************* PP DUF260 89 qlkaelallke 99 +l+++l l+++ SMil_00006114-RA_Salv 100 ELQHDLILART 110 **9988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.84	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.2E-39	12	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MTKNQEARSS SSCAACKFLK RRCTANCQFA PYFRSDEPRR FVKVHKVFGA SNVSKILNEV 60 AEEQREEAVN SLVFEAEVRL QDPVYGCIGA IASLQHKMVE LQHDLILART RLACYVDHHH 120 QPPPPTFFDD HLDMPPLFPA TPIPDLFDHP TLPLDHFAPL HFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-39	9	115	8	114	LOB family transfactor Ramosa2.1
5ly0_B	7e-39	9	115	8	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076828.2	1e-84	LOB domain-containing protein 21-like
Swissprot	Q9SRL8	1e-56	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A4D9AD53	6e-86	A0A4D9AD53_SALSN; Uncharacterized protein
STRING	XP_009786680.1	7e-64	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	5e-59	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]