PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00006160-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NAC

Protein Properties

Length: 318aa MW: 36515.8 Da PI: 8.8279

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00006160-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.7	1.6e-55	23	149	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhP+deel+++yL +kv +++++ +i evd++kvePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgk SMil_00006160-RA_Salv 23 LPPGFRFHPSDEELITHYLSHKVVDTSFSP-IAIGEVDLNKVEPWDLPWKAKLGEKEWYFFCMRDRKYPTGMRTNRATEAGYWKATGK 109 79***********************988.78***********888999****************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 dk++++ ++lvg+kktLvfy+grapkg kt+Wvmheyrle SMil_00006160-RA_Salv 110 DKDIFR-AKSLVGMKKTLVFYRGRAPKGLKTNWVMHEYRLE 149 **.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-63	15	173	IPR003441	NAC domain
PROSITE profile	PS51005	59.369	23	173	IPR003441	NAC domain
Pfam	PF02365	4.7E-29	24	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
LPKTEIHIAR MDCMRLDEES IELPPGFRFH PSDEELITHY LSHKVVDTSF SPIAIGEVDL 60 NKVEPWDLPW KAKLGEKEWY FFCMRDRKYP TGMRTNRATE AGYWKATGKD KDIFRAKSLV 120 GMKKTLVFYR GRAPKGLKTN WVMHEYRLEG KHSMHNLNKS ARNEWVICRI FMKTAGGKKV 180 HISGLMSGGA DSQSSDLPPL MEFSSDDNRL ILLLARRRYL TRHNRDFPPF PFAFPNASPL 240 NSSSFPPQLI PRAENSSARD SATMQDQSVI RLLFDNNVPN MKTEFEQGMS GVGFKAYQDQ 300 EIPVISSTAI DLDCLWDY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-54	21	179	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-54	21	179	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-54	21	179	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-54	21	179	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-54	20	179	17	174	NAC domain-containing protein 19
3swm_B	2e-54	20	179	17	174	NAC domain-containing protein 19
3swm_C	2e-54	20	179	17	174	NAC domain-containing protein 19
3swm_D	2e-54	20	179	17	174	NAC domain-containing protein 19
3swp_A	2e-54	20	179	17	174	NAC domain-containing protein 19
3swp_B	2e-54	20	179	17	174	NAC domain-containing protein 19
3swp_C	2e-54	20	179	17	174	NAC domain-containing protein 19
3swp_D	2e-54	20	179	17	174	NAC domain-containing protein 19
4dul_A	2e-54	21	179	15	171	NAC domain-containing protein 19
4dul_B	2e-54	21	179	15	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00496	DAP	Transfer from AT5G07680	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808, ECO:0000269\|PubMed:18305205, ECO:0000305\|PubMed:15723790}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011098651.1	1e-142	NAC domain-containing protein 79
Swissprot	Q9FLR3	1e-110	NAC79_ARATH; NAC domain-containing protein 79
TrEMBL	A0A2G9H007	1e-129	A0A2G9H007_9LAMI; Uncharacterized protein
STRING	PGSC0003DMT400003380	1e-121	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07680.1	1e-113	NAC domain containing protein 80

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Vidal EA,Álvarez JM,Gutiérrez RA Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function. Plant Signal Behav, 2014. 9(3): p. e28501 [PMID:24642706] Lee MH,Jeon HS,Kim HG,Park OK An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643]